#!/bin/bash
read -p "amino acid: " AAA
if [[ "ALA ARG ASN ASP CYS GLN GLY GLU HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL" =~ $AAA ]]
then for i in HS_*.pdb
do cat $i | voronota get-balls-from-atoms-file --annotated | \
awk -F"[<>]" -vSRCH="$AAA" '$0 ~ SRCH && !OCC[$4]++ {CNT++ } END {print CNT+0}' $i
done
else echo exit 1
fi
on MAC OS Mojave terminal I get this error:
Code:
awk: invalid -v option
Last edited by Scrutinizer; 06-06-2019 at 12:37 PM..
Reason: quote tags -> code tags
I was wondering if it was possible to tell awk to print the output of a command in the print.
.... | awk '{print $0}'
I would like it to print the date right before $0, so something like (this doesn't work though)
.... | awk '{print date $0}' (4 Replies)
Hi, I'm stuck in an awkward situation please help :)
I have two identical Seagate 80GB harddrives.
My objective is a bit strange.
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2.When booting using the master drive, I also want to mount the cloned backup disk so I can do incremental... (6 Replies)
I have a file, let's say 1.jpg, and I have a text file that contains a list of filenames I would like to duplicate 1.jpg as (i.e., 2.jpg, 3.jpg, 4.jpg, etc.). The filenames that I want to create are all on separate lines, one per line.
I'm sure there's a simple solution, but I'm not claiming to... (7 Replies)
Hi all,
Actually 2 files are there - file1, file2.
file1 contains --->
london
mosco
america
russia
mosco
file2 contains -->
europe
india
japan
mosco
england
london
Question is I want to print all the city names without duplication cities in those... (10 Replies)
i have many questions concerning the FD.
it was stated that "to redirect Error to output std, you have to write the following code"
# ls -alt FileNotThere File > logfile 2>&1
# cat logfile
ls: cannot access FileNotThere: No such file or directory
-rw-r--r-- 1 root root 0 2010-02-26... (9 Replies)
Hey,
I am making a Facebook like Page system as my first project, So far it's been bate in mind I did it from my 3DS at the same time as my PC gets replaced, So far it's turned out great. Now I am on to creation the blocking system I need to get the code to say If the user already likes the... (0 Replies)
Hi all,
I download and install lessfs for deduplication,
I copy files in /SharedFiles directory and lessfs work right and not store again copy files,
but, when i delete all files in /SharedFiles , not return free space to total space,
files not show in /SharedFiles , but not copy new files in... (3 Replies)
So while this seemed totally trivial it turned out to be much more difficult than I had thought.
I have a file with 3 rows, and I "just" want to add each field n number of times. E.g.
> cat file.txt
0.5
-0.1
0.6
for n=3 into:
cat newfile.txt
0.5 0.5 0.5
-0.1 -0.1 -0.1
0.6 0.6 0.6
I... (4 Replies)
Hello,
Giving those commands:
cat > myfile
1
2
3
^D
cat myfile | awk '{ s=s+$1 ; print s}'
The output is:
1
3
6
It seems like this command iterates each time on a different row so $1 is the first field of each row.. But what caused it to refer to each row ?.
What I mean... (3 Replies)
Discussion started by: uniran
3 Replies
LEARN ABOUT DEBIAN
bfbtester
BFBTESTER(1) General Commands Manual BFBTESTER(1)NAME
bfbtester - Brute Force Binary Tester
SYNOPSIS
bfbtester [-htv] [-d level] [-r rejects] [-o out-file] [-x max-execs] -a|[-sme] files ...
DESCRIPTION
BFBTester is great for doing quick, proactive, security checks of binary programs. BFBTester will perform checks of single and multiple
argument command line overflows as well as environment variable overflows. BFBTester can also watch for tempfile creation activity to alert
the user of any programs using unsafe tempfile names. While BFBTester can not test all overflows in software, it is useful for detecting
initial mistakes that can red flag dangerous software.
OPTIONS
You must specify one or more of the following tests:
-s Single Argument Test.
-m Multiple Argument Test.
-e Environment Variable Test.
-a Selects all tests
Other options:
-h Print help.
-t Enable tempfile monitoring.
-v Print version string.
-d level
Set debug level (default = 0, max = 2).
-r rejects
Comma separated list of binaries to skip.
-o out-file
Output to out-file rather than stdout.
-x max-execs
Set maximum executables to run in parallel (default = 250).
file Specific binary or a directory of binaries to test.
OVERVIEW
You must specify at least one test to run and you must specify either a binary or a directory.
Executable selection is now done in one of several ways:
If the executable filename is specified with a leading slash (an absolute path), no selection is used and the supplied absolute filename is
used.
If there is no leading slash in the filename the selection is made in one of two ways (in this order):
1) Prepend file name with $PWD and test accesiblity
2) Search through $PATH and find first accessible executable The first one to succeed is the executable choosen.
If the filename found is a directory, we walk the directory (one level deep) looking for executable binaries.
Symbolic links are followed.
You can specify binaries to skip (useful when loading a whole directory) by using the -r option.
The following is a crash report:
*** Crash </usr/bin/patch> ***
args: -D [05120]
envs: (null)
Signal: 11 ( Segmentation fault )
Core? Yes
This means "/usr/bin/patch" crashed when fed with an "-D" and a word 5,120 characters long:
$ /usr/bin/patch -D AAA...5,120 characters...AAA
(Numbers in brackets mean replace with a word that many characters long)
BFBTester is very CPU intensive, and will open many files, so you probably don't want to run it on a production machine during it's busiest
period. Just a warning...
EXAMPLES
bfbtester -s /usr/bin
Run the single argument test on all binaries in folder /usr/bin.
bfbtester -ta patch traceroute
Run all tests against patch and traceroute and run the tempfile monitor.
bfbtester -a ./bfbtester
Tests bfbtester (provided it's in the same directory).
bfbtester -r kill /usr/bin/kill
Does nothing.
AUTHOR
This manual page was written by Karl Soderstrom <ks@debian.org>, for the Debian GNU/Linux system (but may be used by others).
januari 23, 2001 BFBTESTER(1)