bowtie-build(1) [debian man page]
BOWTIE-BUILD(1) User Commands BOWTIE-BUILD(1) NAME
bowtie-build - building a colorspace index for bowtie SYNOPSIS
bowtie-build [options]* <reference_in> <ebwt_outfile_base> DESCRIPTION
reference_in comma-separated list of files with ref sequences ebwt_outfile_base write Ebwt data to files with this dir/basename OPTIONS
-f reference files are Fasta (default) -c reference sequences given on cmd line (as <seq_in>) -C/--color build a colorspace index -a/--noauto disable automatic -p/--bmax/--dcv memory-fitting -p/--packed use packed strings internally; slower, uses less mem -B build both letter- and colorspace indexes --bmax <int> max bucket sz for blockwise suffix-array builder --bmaxdivn <int> max bucket sz as divisor of ref len (default: 4) --dcv <int> diff-cover period for blockwise (default: 1024) --nodc disable diff-cover (algorithm becomes quadratic) -r/--noref don't build .3/.4.ebwt (packed reference) portion -3/--justref just build .3/.4.ebwt (packed reference) portion -o/--offrate <int> SA is sampled every 2^offRate BWT chars (default: 5) -t/--ftabchars <int> # of chars consumed in initial lookup (default: 10) --ntoa convert Ns in reference to As --seed <int> seed for random number generator -q/--quiet verbose output (for debugging) -h/--help print detailed description of tool and its options --usage print this usage message --version print version information and quit 64-bit Built on wr-linux02 Tue Apr 24 11:36:57 UTC 2012 Compiler: gcc version 4.6.3 (Debian 4.6.3-4) Options: -O3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wl,-z,relro Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8} bowtie-build version 0.12.7 April 2012 BOWTIE-BUILD(1)
Check Out this Related Man Page
MK-BUILD-DEPS(1) MK-BUILD-DEPS(1) NAME
mk-build-deps - build a package satisfying a package's build-dependencies SYNOPSIS
mk-build-deps --help|--version mk-build-deps [options] control file | package name ... DESCRIPTION
Given a package name and/or control file, mk-build-deps will use equivs to generate a binary package which may be installed to satisfy all the build dependencies of the given package. If --build-dep and/or --build-indep are given, then the resulting binary package(s) will depend solely on the Build-Depends/Build-Depends-Indep dependencies, respectively. OPTIONS
-i, --install Install the generated packages and its build-dependencies. -t, --tool When installing the generated package use the specified tool. (default: apt-get --no-install-recommends) -r, --remove Remove the package file after installing it. Ignored if used without the --install switch. -a foo, --arch foo If the source package has architecture-specific build dependencies, produce a package for architecture foo, not for the system architecture. (If the source package does not have architecture-specific build dependencies, the package produced is always for the pseudo-architecture all.) -B, --build-dep Generate a package which only depends on the source package's Build-Depends dependencies. -A, --build-indep Generate a package which only depends on the source package's Build-Depends-Indep dependencies. -h, --help Show a summary of options. -v, --version Show version and copyright information. -s, --root-cmd Use the specified tool to gain root privileges before installing. Ignored if used without the --install switch. AUTHOR
mk-build-deps is copyright by Vincent Fourmond and was modified for the devscripts package by Adam D. Barratt <adam@adam-barratt.org.uk>. This program comes with ABSOLUTELY NO WARRANTY. You are free to redistribute this code under the terms of the GNU General Public License, version 2 or later. Debian Utilities 2013-12-23 MK-BUILD-DEPS(1)