cmtk-overlap(1) [debian man page]
overlap(1) The Computational Morphometry Toolkit overlap(1) NAME
overlap - Overlap computation SYNOPSIS
overlap [options] image0 image1 [image2 ...] DESCRIPTION
Compute overlap measures between two or more images OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --pad-in <double>, -p <double> Define padding value for input images [Default: disabled] --mask <string>, -m <string> Mask file for optional region-based analysis [Default: NONE] --num-labels <integer>, -N <integer> Number of label values [default: autodetect] [Default: 0] --first-label <integer>, -f <integer> Index of first label value [default: 0]; labels below this one are ignored [Default: 0] --by-label Analysis by label, i.e., separately for each label in given (detected) range AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 overlap(1)
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detect_spheres_matched_filter(1) The Computational Morphometry Toolkit detect_spheres_matched_filter(1) NAME
detect_spheres_matched_filter - Detect spheres SYNOPSIS
detect_spheres_matched_filter InputImage OutputImage DESCRIPTION
This tool detects spherical objects in three-dimensional images. OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --radius <double>, -r <double> Radius of spheres to detect in physical length units (typically mm). [Default: 1] --filter-margin <integer> Half of filter margin width in pixels. This determines the extent of the region around the surface or the sphere where the detection filter is non-zero. [Default: 2] --normalized Use intensity-normalized filter, effectively computing Normalized Cross Correlation between filter and image. AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 detect_spheres_matched_filter(1)