statistics(1) The Computational Morphometry Toolkit statistics(1)
NAME
statistics - Image statistics
SYNOPSIS
statistics [options] ImageFile0 [ImageFile1 ...]
DESCRIPTION
Statistical computations on image pixel intensities, i.e., means and standard deviations
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
--label, -l
Interpret voxel values as labels
--gray, -g
Interpret voxel values as gray values (default) [This is the default]
--log, -L
Apply log() function to data
--exp, -e
Apply exp() function to data
--num-bins <integer>, -n <integer>
Number of histogram bins. [Default: 256]
--column, -C
Write statistics in column format rather than line format.
--e-notation, -E
Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001)
--mask <string>, -m <string>
Analyze region based on binary mask file [Default: disabled]
--Mask <string>, -M <string>
Analyze regions separately based on mask file (label field). [Default: NONE]
--mask-output-all-up-to <integer>
Output results for all mask values up to given value, even such that do not actually appear in the mask. [Default: 0]
--percentile <double>, -p <double>
Add value to list of percentile to compute.
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
CMTK 2.2.2 Jul 20 2012 statistics(1)