volume_injection(1) The Computational Morphometry Toolkit volume_injection(1)
NAME
volume_injection - Volume injection
SYNOPSIS
volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]
DESCRIPTION
Reconstruction a high-resolution volume from multiple co-registered (low-resolution) images using forward volume injection
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Options
--exclude-first-image, -x
Exclude first image from reconstruction as a separate registration target image)
--pass-weight <string>, -W <string>
Set contribution weight for a pass in the form 'pass:weight'
Reconstruction Grid Options
--recon-grid <string>
Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)
--recon-grid-path <string>, -R <string>
Give path to grid that defines reconstructed image grid [including offset] [Default: NONE]
--crop <string>
Crop reference to pixel region x0,y0,z1:x1,y1,z1
Volume Injection Options
--isotropic-injection
Use isotropic volume injection [default: scaled with pass image pixel size per dimension]
--injection-kernel-sigma <double>, -S <double>
Gauss contribution [Default: 1]
--injection-kernel-radius <integer>, -r <integer>
VolumeInjectionRadius of affected pixel [Default: 0]
Output Options
--output <string>, -o <string>
Output image path [Default: volume_injection.nii ]
--write-images-as-float, -F
Write output images as floating point [default: same as input]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
CMTK 2.2.2 Jul 20 2012 volume_injection(1)