g_wheel(1) [debian man page]

g_wheel(1)					 GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c					g_wheel(1)

NAME

       g_wheel - plots helical wheels

       VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS

       g_wheel -f nnnice.dat -o plot.eps -[no]h -[no]version -nice int -r0 int -rot0 real -T string -[no]nn

DESCRIPTION

	 g_wheel plots a helical wheel representation of your sequence.  The input sequence is in the  .dat file where the first line contains the
       number of residues and each consecutive line contains a residue name.

FILES

       -f nnnice.dat Input
	Generic data file

       -o plot.eps Output
	Encapsulated PostScript (tm) file

OTHER OPTIONS

       -[no]hno
	Print help info and quit

       -[no]versionno
	Print version info and quit

       -nice int 19
	Set the nicelevel

       -r0 int 1
	The first residue number in the sequence

       -rot0 real 0
	Rotate around an angle initially (90 degrees makes sense)

       -T string
	Plot a title in the center of the wheel (must be shorter than 10 characters, or it will overwrite the wheel)

       -[no]nnyes
	Toggle numbers

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

								  Mon 4 Apr 2011							g_wheel(1)

g_principal(1)					 GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c				    g_principal(1)

NAME

       g_principal - calculates axes of inertia for a group of atoms

       VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS

       g_principal  -f	traj.xtc  -s topol.tpr -n index.ndx -a1 axis1.dat -a2 axis2.dat -a3 axis3.dat -om moi.dat -[no]h -[no]version -nice int -b
       time -e time -dt time -tu enum -[no]w -[no]foo

DESCRIPTION

	g_principal calculates the three principal axes of inertia for a group of atoms.

FILES

       -f traj.xtc Input
	Trajectory: xtc trr trj gro g96 pdb cpt

       -s topol.tpr Input
	Structure+mass(db): tpr tpb tpa gro g96 pdb

       -n index.ndx Input, Opt.
	Index file

       -a1 axis1.dat Output
	Generic data file

       -a2 axis2.dat Output
	Generic data file

       -a3 axis3.dat Output
	Generic data file

       -om moi.dat Output
	Generic data file

OTHER OPTIONS

       -[no]hno
	Print help info and quit

       -[no]versionno
	Print version info and quit

       -nice int 19
	Set the nicelevel

       -b time 0
	First frame (ps) to read from trajectory

       -e time 0
	Last frame (ps) to read from trajectory

       -dt time 0
	Only use frame when t MOD dt = first time (ps)

       -tu enum ps
	Time unit:  fs,  ps,  ns,  us,	ms or  s

       -[no]wno
	View output  .xvg,  .xpm,  .eps and  .pdb files

       -[no]foono
	Dummy option to avoid empty array

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

								  Mon 4 Apr 2011						    g_principal(1)