heckle(1) [debian man page]

HECKLE(1)							   User Commands							 HECKLE(1)

NAME

       heckle - mutate Ruby code and run test

SYNOPSIS

       heckle class_name [method_name]

DESCRIPTION

       `heckle'  is  a	mutation tester. It modifies your code and runs your tests to make sure they fail. The idea is that if code can be changed
       and your tests don't notice, either that code isn't being covered or it doesn't do anything.

       -v, --verbose
	      Loudly explain heckle run

       -V, --version
	      Prints Heckle's version number

       -t, --tests TEST_PATTERN
	      Location of tests (glob)

       -F, --force
	      Ignore initial test failures

	      Best used with --focus

       --assignments
	      Only mutate assignments

       -b, --branches
	      Only mutate branches

       -f, --focus
	      Apply the eye of sauron

       -T, --timeout SECONDS
	      The maximum time for a test run in seconds

	      Used to catch infinite loops

       -n, --nodes NODES
	      Nodes to mutate

	      Possible values: call, cvasgn ,dasgn, dasgn_curr, false, gasgn, iasgn, if, iter, lasgn, lit, str, true, until, while

       -x, --exclude-nodes NODES
	      Nodes to exclude

       -h, --help
	      Show this message

heckle 1.4.3							     June 2012								 HECKLE(1)

BP_MUTATE(1p)						User Contributed Perl Documentation					     BP_MUTATE(1p)

NAME

       mutate.pl - randomly mutagenize a single protein or DNA sequence

SYNOPSIS

	 ./mutate.pl -p 25 -i test.fa -n 5 -f swiss -o muts.swiss

	 #or

	 ./mutate.pl --percent=25 --input=test.fa --number=5 -output=x.fa

DESCRIPTION

       Randomly mutagenize a single protein or DNA sequence one or more times.	Specify percentage mutated and number of resulting mutant
       sequences.  Print mutagenized sequences to STDOUT or write to an output file.

	 -h|--help    Help
	 -p|--percent Percent mutagenized
	 -n|--number  Number of mutant sequences created
	 -o|--output  Output file (optional)
	 -f|--format  Output format (default: fasta)
	 -i|--input   Input file

FEEDBACK

       User feedback is an integral part of the evolution of this and other Bioperl scripts. Send your comments and suggestions to the Bioperl
       mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR

       Brian Osborne, bosborne at alum.mit.edu

perl v5.14.2							    2012-03-02							     BP_MUTATE(1p)