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mcverter(1) [debian man page]

MCVERTER(1)							   User Commands						       MCVERTER(1)

NAME

       mcverter - non-interactive MRI conversion software

SYNOPSIS

       mcverter -o <str> -f <str> [-x] [-d] [-a] [-n] [-b] [-u] [-s <num>] [-m <str>] [-F <str>] [-r] [-v] [-i] [-h] Input directory or file(s)...

DESCRIPTION

       -o, --output=<str>
	      Output directory for converted files

       -f, --format=<str>
	      Output format: fsl, spm, meta, nifti, analyze, or bv

       -x     Save each series to a separate directory

       -d     Save output volumes as 4D files

       -a     Save header only (metaimage only)

       -n, --nii
	      Save files as .nii (nifti/fsl only)

       -b, --v16
	      Save .v16 files (BrainVoyager only)

       -u     Use patient id instead of patient name for output file

       -s, --skip=<num>
	      Skip first n volumes

       -m, --match=<str>
	      Only convert files whose series descriptions include this string

       -F, --fnformat=<str>
	      Use  this  format for name of output file: +/- PatientName, PatientId, SeriesDate, SeriesTime, StudyId, StudyDescription, SeriesNum-
	      ber, SequenceName, ProtocolName, SeriesDescription

       -r, --rescale
	      Apply rescale slope and intercept to data

       -v, --verbose
	      Verbose mode

       -i, --version
	      Version info

       -h, --help
	      Display help

SEE ALSO

       The full documentation for mcverter is maintained as a Texinfo manual.  If the info and mcverter programs are properly  installed  at  your
       site, the command

	      info mcverter

       should give you access to the complete manual.

mcverter 2.0.235						    March 2012							       MCVERTER(1)

Check Out this Related Man Page

TRNA2SAP(1)						     NCBI Tools User's Manual						       TRNA2SAP(1)

NAME

       trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

SYNOPSIS

       trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]

DESCRIPTION

       trna2sap  reads	a  text  file  produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI
       tools.

OPTIONS

       A summary of options is included below.

       -      Print usage message

       -a     Add tRNAscan-SE citation

       -c str Comment

       -f str Substring Filter

       -i filename
	      Single Input file (standard input by default)

       -j     Just produce a five-column feature table, a la trna2tbl(1).

       -m str ReMark

       -n str Annotation Name (normally "tRNA").

       -o filename
	      Single Output file (standard output by default)

       -p dir Path to files

       -r dir Path for Results

       -s     Ignore Pseudo tRNAs

       -t str Annotation Title (normally "tRNAscan-SE").

       -u     Ignore Undetermined tRNAs

       -x str File selection suffix with -p (.trna by default).

AUTHOR

       The National Center for Biotechnology Information.

SEE ALSO

       sequin(1), tbl2asn(1), trna2tbl(1).

NCBI
								    2006-01-11							       TRNA2SAP(1)
Man Page

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