mothur(1) [debian man page]

MOTHUR(1)						      General Commands Manual							 MOTHUR(1)

NAME

       mothur -  sequence analysis suite for research on microbiota

SYNOPSIS

       mothur [ batchfile ]

DESCRIPTION

       This manual page documents briefly the mothur command.

       Mothur seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology commu-
       nity. It has incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more. In addition to  improving  the
       flexibility of these algorithms, a number of other features including calculators and visualization tools were added.

SEE ALSO

       Online manual http://www.mothur.org/wiki/Mothur_manual

AUTHOR

       #PACKAGE# was written by <upstream author>.

       This manual page was written by #USERNAME# <#EMAIL#>, for the Debian project (and may be used by others).

								    2011-01-30								 MOTHUR(1)

CLUSTALW(1)						      General Commands Manual						       CLUSTALW(1)

NAME

       clustalw - a multiple sequence alignment program

SYNOPSIS

       clustalw [options]

DESCRIPTION

       This  manual  page  documents briefly the clustalx command.  This manual page was written for the Debian GNU/Linux distribution because the
       original program does not have a manual page.  Instead, it has other documentation; see below.

       clustalx is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for	performing
       multiple sequence and profile alignments and analysing the results. The sequence alignment is displayed in a window on the screen. A versa-
       tile coloring scheme has been incorporated allowing you to highlight conserved features	in the alignment.  The pull-down menus at the  top
       of the window allow you to select all the options required for traditional multiple sequence and profile alignment.

       You  can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a
       sub-range of the alignment to be realigned and inserted back into the original alignment.

       Alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

SEE ALSO

       Files in /usr/share/doc/clustalx contain a lot of details. The Web page <http://www.clustal.org/> is also helpful.

AUTHOR

       This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).

Manual for clustalw						    2003 July 1 						       CLUSTALW(1)