PC-COMPARE(1) Probcons Manual PC-COMPARE(1)NAME
pc-compare - Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.
SYNOPSIS
pc-compare [TEST_ALIGNMENT] [REFERENCE_ALIGNMENT] [BALIBASE_ANNOT_FILE] [-col] [-core] [-caps] [-annot FILENAME]
NOTE
pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.
SEE ALSO pc-makegnufile(1), pc-project(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.
REFERENCE
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence
Alignment. Genome Research 15: 330-340.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
pc-compare 1.12 2007-04-04 PC-COMPARE(1)
Check Out this Related Man Page
PC-MAKEGNUPLOT(1) Probcons Manual PC-MAKEGNUPLOT(1)NAME
pc-makegnuplot - Utility to plot annotation scores.
SYNOPSIS
pc-makegnuplot [annotscores] [-refscores]
NOTE
pc-makegnuplot is named makegnuplot in the original sources, but has been remamed to avoid collision with other program names.
SEE ALSO pc-compare(1), pc-project(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.
REFERENCE
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence
Alignment. Genome Research 15: 330-340.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
pc-makegnuplot 1.12 2007-04-04 PC-MAKEGNUPLOT(1)
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