TREE-PPUZZLE(1) General Commands Manual TREE-PPUZZLE(1)NAME
tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
SYNOPSIS
tree-ppuzzle
DESCRIPTION
This manual page documents briefly the tree-ppuzzle command. This manual page was written for the Debian GNU/Linux distribution because
the original program does not have a manual page.
TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!
tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large
data sets and automatically assigns estimations of support to each internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood
distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addi-
tion, TREE-PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without comput-
ing an overall tree and to visualize the phylogenetic content of a sequence alignment.
This program is the paralelized version of tree-puzzle.
OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
SEE ALSO phylip(1), treetool(1). tree-puzzle(1).
This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 20, 2001 TREE-PPUZZLE(1)
Check Out this Related Man Page
GIT-WRITE-TREE(1) Git Manual GIT-WRITE-TREE(1)NAME
git-write-tree - Create a tree object from the current index
SYNOPSIS
git write-tree [--missing-ok] [--prefix=<prefix>/]
DESCRIPTION
Creates a tree object using the current index. The name of the new tree object is printed to standard output.
The index must be in a fully merged state.
Conceptually, git write-tree sync()s the current index contents into a set of tree files. In order to have that match what is actually in
your directory right now, you need to have done a git update-index phase before you did the git write-tree.
OPTIONS --missing-ok
Normally git write-tree ensures that the objects referenced by the directory exist in the object database. This option disables this
check.
--prefix=<prefix>/
Writes a tree object that represents a subdirectory <prefix>. This can be used to write the tree object for a subproject that is in the
named subdirectory.
AUTHOR
Written by Linus Torvalds <torvalds@osdl.org[1]>
DOCUMENTATION
Documentation by David Greaves, Junio C Hamano and the git-list <git@vger.kernel.org[2]>.
GIT
Part of the git(1) suite
NOTES
1. torvalds@osdl.org
mailto:torvalds@osdl.org
2. git@vger.kernel.org
mailto:git@vger.kernel.org
Git 1.7.1 07/05/2010 GIT-WRITE-TREE(1)
Hi there thanks for checking in
The I T manager over here wants us to convert 1 branch in our company from Win98 to Linux
I would just like to know the types of problems that we will have once this is done.
I would also like to know the following.
Does Linux come with a Office package... (3 Replies)
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SunOS ABC 5.8 Generic_117350-18 sun4u sparc SUNW,Sun-Fire-V240
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hello
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As i would understand Unix, it is a OS.
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Hi,
I hope this is the right place to post this:
I have a cprogram written in openCV which reads a video file and does some processing: Here's a relevant code snippet:
//just in case you needed to know what libraries I included
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I want to use tree to display the directory tree. It is easy to use
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However I would like to run it on specific list of directories. Can such a thing be performed?
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Dear all,
I have >5000 files in newick tree format (which generally used for representing phylogenetic relationships) something like below.
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