vboverlap(1) [debian man page]

vboverlap(1)							 The VoxBo Manual						      vboverlap(1)

NAME

       vboverlap - overlap stats for 3D masks and atlases

SYNOPSIS

       vboverlap <flag> ... <mask>

DESCRIPTION

       vboverlap is part of the VoxBo suite of tools for brain image analysis.

       vboverlap  takes as input an atlas map (3D volume with labeled regions) and a mask, and produces a summary of the overlap.  It's useful for
       understanding what regions are impinged by a lesion, or are included by an activated region.

       To get a complete list of available flags, run the program with no arguments.

AVAILABILITY

       Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net)  for  Debian  deriva-
       tives.

CAVEATS

       VoxBo is provided with no warranty whatsoever.

AUTHOR

       For an historical roster of the VoxBo development team, visit www.voxbo.org.

SEE ALSO

       For  detailed  help  on	any VoxBo command-line program, run it with no arguments.  For graphical programs, use the -h flag.  For more help
       with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org.

       For information about file format support in VoxBo, see voxbo-fileformats(7).  For general information about VoxBo, see voxbo(7).

VoxBo							      January, 2011 (v1.8.5)						      vboverlap(1)

vborient(1)							 The VoxBo Manual						       vborient(1)

NAME

       vborient - re-orient 3D or 4D image data

SYNOPSIS

       vborient <infile> <outfile> <new orientation> [-from <orient>]

DESCRIPTION

       vborient is part of the VoxBo suite of tools for brain image analysis.

       vborient  re-orients  3D  and 4D volumes along the major axes, using simple three-letter codes for (R)ight, (L)eft, (I)nferior, (S)uperior,
       (A)nterior, and (P)osterior.  E.g., an axial image in radiological orientation is RPI.

       To get a complete list of available flags, run the program with no arguments.

AVAILABILITY

       Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net)  for  Debian  deriva-
       tives.

CAVEATS

       VoxBo is provided with no warranty whatsoever.

AUTHOR

       For an historical roster of the VoxBo development team, visit www.voxbo.org.

SEE ALSO

       For  detailed  help  on	any VoxBo command-line program, run it with no arguments.  For graphical programs, use the -h flag.  For more help
       with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org.

       For information about file format support in VoxBo, see voxbo-fileformats(7).  For general information about VoxBo, see voxbo(7).

VoxBo							      January, 2011 (v1.8.5)						       vborient(1)