vbtmap(1) The VoxBo Manual vbtmap(1)NAME
vbtmap - create a t-statistic map for VLSM
SYNOPSIS
vbtmap <lesionfile> <scorefile> <outfile> <flag> ...
DESCRIPTION
vbtmap is part of the VoxBo suite of tools for brain image analysis.
vbtmap takes as input: a 4D lesion file containing 0/1 lesion maps for a series of subjects; and a 1D file containing a score for each sub-
ject. It carries out a separate t-test for each voxel comparing the scores of those subjects with a lesion in that voxel with the remain-
ing subjects. vbtmap can optionally calculate a Welch's t-test, and can calculate FDR-controlling thresholds.
To get a complete list of available flags, run the program with no arguments.
AVAILABILITY
Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net) for Debian deriva-
tives.
CAVEATS
VoxBo is provided with no warranty whatsoever.
AUTHOR
For an historical roster of the VoxBo development team, visit www.voxbo.org.
SEE ALSO
For detailed help on any VoxBo command-line program, run it with no arguments. For graphical programs, use the -h flag. For more help
with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org.
For information about file format support in VoxBo, see voxbo-fileformats(7). For general information about VoxBo, see voxbo(7).
VoxBo January, 2011 (v1.8.5) vbtmap(1)
Check Out this Related Man Page
vbmaskinfo(1) The VoxBo Manual vbmaskinfo(1)NAME
vbmaskinfo - summarize a series of 3D image masks
SYNOPSIS
vbmaskinfo <file> ... [<flags> ...]
DESCRIPTION
vbmaskinfo is part of the VoxBo suite of tools for brain image analysis.
vbmaskinfo takes as input either a series of 3D mask files or one or more 4D mask files (each "time" point is a separate mask), and summa-
rizes the mask data in various ways.
To get a complete list of available flags, run the program with no arguments.
AVAILABILITY
Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net) for Debian deriva-
tives.
CAVEATS
VoxBo is provided with no warranty whatsoever.
AUTHOR
For an historical roster of the VoxBo development team, visit www.voxbo.org.
SEE ALSO
For detailed help on any VoxBo command-line program, run it with no arguments. For graphical programs, use the -h flag. For more help
with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org.
For information about file format support in VoxBo, see voxbo-fileformats(7). For general information about VoxBo, see voxbo(7).
VoxBo January, 2011 (v1.8.5) vbmaskinfo(1)
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