bp_split_seq(1p) [debian man page]
BP_SPLIT_SEQ(1p) User Contributed Perl Documentation BP_SPLIT_SEQ(1p) NAME
split_seq - splits a sequence into equal sized chunks with an optional overlapping range SYNOPSIS
split_seq -c 10000 [-o 1000] [-i] -f seq.in DESCRIPTION
The script will split sequences into chunks Mandatory Options: -c Desired length of the resulting sequences. -f Input file (must be FASTA format). Special Options: -o Overlapping range between the resulting sequences. -i Create an index file with the resulting sequence files. This is useful if you want to pass this list as input arguments into another programs (i.e. CLUSTAL, HMMER, etc.). FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHORS
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt> Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt> (some enhancements) perl v5.14.2 2012-03-02 BP_SPLIT_SEQ(1p)
Check Out this Related Man Page
BP_GCCALC(1p) User Contributed Perl Documentation BP_GCCALC(1p) NAME
gccalc - GC content of nucleotide sequences SYNOPSIS
gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence from the input file. OPTIONS
The default sequence format is fasta. The sequence input can be provided using any of the three methods: unnamed argument gccalc filename named argument gccalc -i filename standard input gccalc < filename FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu Submitted as part of bioperl script project 2001/08/06 perl v5.14.2 2012-03-02 BP_GCCALC(1p)