tab2graph(1p) [debian man page]

TAB2GRAPH(1p)						User Contributed Perl Documentation					     TAB2GRAPH(1p)

NAME

       tab2graph - turn tabular data into a graph

SYNOPSIS

	 tab2graph [options] file.tab

       Options:

	 -c|--color	      Add some color to the output (default is white)
	 -d|--directed	      Make graph directed (default is not)
	 -l|--layout	      GraphViz layout; choose from dot, neato, twopi,
			      circo (default), and fdp
	 -f|--fields	      Restrict to set of fields in first row
	 -n|--numbers	      Show the numbers (default is not)
	 -o|--out	      Name of output file (default is STDOUT)
	 --format	      Output format (default is PNG)
	 --fs=x 	      Use "x" as the field separator (default is tab)
	 --rs=x 	      Use "x" as the record separator (default is newline)

	 --help 	      Show brief help and quit
	 --man		      Show full documentation

DESCRIPTION

       Turns tabular data into a graph using GraphViz.	This may or may not be useful.

SEE ALSO

       o   Text::RecordParser

       o   GraphViz

AUTHOR

       Ken Youens-Clark <kclark@cpan.org>.

LICENSE AND COPYRIGHT

       Copyright (C) 2009-10 Ken Youens-Clark.	All rights reserved.

       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; version 2.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
       MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

perl v5.10.1							    2010-07-26							     TAB2GRAPH(1p)

PRIMER_DESIGNER(1p)					User Contributed Perl Documentation				       PRIMER_DESIGNER(1p)

NAME

       primer_designer.pl -- command-line interface Bio::PrimerDesigner

SYNOPSIS

	   ./primer_designer.pl [options] [dna_sequence or file]

	 Options:

	 -p|--program	Program (default "primer3")
	 -n|--number	Number of primer sets to return (default "5")
	 -b|--binary	Path to binary executable (default "/usr/local/bin")
	 -m|--method	"local" or "remote" (default "local")
	 -u|--url	URL of remote primer3/e-PCR system (default
			  "aceserver.biotech.ubc.ca/cgi-bin/primer_designer.cgi")
	 --list-aliases Print alias list to primer3 input options and exit
	 --list-params	Print a list of primer3/e-PCR input options and exit
	 -h|--help	Print help and exit

DESCRIPTION

       This script tests/demonstrates the Bio::PrimerDesigner interface to primer3 and e-PCR.  It can be used with a local installation of the
       unix binaries or remotely via an HTTP/CGI request.

AUTHOR

       Copyright (C) 2003-2009 Sheldon McKay <mckays@cshl.edu>, Ken Youens-Clark <kclark@cpan.org>.

SEE ALSO

       Bio::PrimerDesigner.

LICENSE

       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; version 3 or any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
       MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
       Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

perl v5.10.0							    2009-08-04						       PRIMER_DESIGNER(1p)