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beagle_beagleflag(3) [debian man page]

beagle.BeagleFlag(3)						     HMSBEAGLE						      beagle.BeagleFlag(3)

NAME

       beagle.BeagleFlag -

SYNOPSIS

   Public Member Functions
       BeagleFlag (long mask, String meaning)
       long getMask ()
       String getMeaning ()
       boolean isSet (long flags)

   Static Public Member Functions
       static String toString (long flags)

   Public Attributes
       PRECISION_SINGLE = (1 << 0, 'double precision computation')
       PRECISION_DOUBLE = (1 << 1, 'single precision computation')
       COMPUTATION_SYNCH = (1 << 2, 'synchronous computation (blocking')
       COMPUTATION_ASYNCH = (1 << 3, 'asynchronous computation (non-blocking)')
       EIGEN_REAL = (1 <<4, 'real eigenvalue computation')
       EIGEN_COMPLEX = (1 <<5, 'complex eigenvalue computation')
       SCALING_MANUAL = (1 << 6, 'manual scaling')
       SCALING_AUTO = (1 << 7, 'auto-scaling on')
       SCALING_ALWAYS = (1 << 8, 'scale at every update')
       SCALING_DYNAMIC = (1 << 19, 'manual scaling with dynamic checking')
       SCALERS_RAW = (1 << 9, 'save raw scalers')
       SCALERS_LOG = (1 << 10, 'save log scalers')
       VECTOR_SSE = (1 << 11, 'SSE vector computation')
       VECTOR_NONE = (1 << 12, 'no vector computation')
       THREADING_OPENMP = (1 << 13, 'OpenMP threading')
       THREADING_NONE = (1 << 14, 'no threading')
       PROCESSOR_CPU = (1 << 15, 'use CPU as main processor')
       PROCESSOR_GPU = (1 << 16, 'use GPU as main processor')
       PROCESSOR_FPGA = (1 << 17, 'use FPGA as main processor')
       PROCESSOR_CELL = (1 << 18, 'use CELL as main processor')

Detailed Description
       Author:
	   Andrew Rambaut

	   Marc Suchard

       Version:
	   $Id$

Author
       Generated automatically by Doxygen for HMSBEAGLE from the source code.

Version 1.0.0							  Fri May 25 2012					      beagle.BeagleFlag(3)

Check Out this Related Man Page

beagle::cpu::BeagleCPU4StateImpl(3)				     HMSBEAGLE				       beagle::cpu::BeagleCPU4StateImpl(3)

NAME

       beagle::cpu::BeagleCPU4StateImpl -

SYNOPSIS

       Inherits beagle::cpu::BeagleCPUImpl< BEAGLE_CPU_GENERIC >.

   Public Member Functions
       virtual const char * getName ()
       virtual void calcStatesStates (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE
	   *matrices2)
       virtual void calcStatesPartials (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE
	   *matrices2)
       virtual void calcPartialsPartials (REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const
	   REALTYPE *matrices2)
       virtual int calcRootLogLikelihoods (const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int
	   scalingFactorsIndex, double *outSumLogLikelihood)
       virtual int calcRootLogLikelihoodsMulti (const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices,
	   const int *scaleBufferIndices, int count, double *outSumLogLikelihood)
       virtual int calcEdgeLogLikelihoods (const int parentBufferIndex, const int childBufferIndex, const int probabilityIndex, const int
	   categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood)
       virtual void calcStatesStatesFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int
	   *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcStatesPartialsFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE
	   *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcPartialsPartialsFixedScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const
	   REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcPartialsPartialsAutoScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const
	   REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling)
       int integrateOutStatesAndScale (const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double
	   *outSumLogLikelihood)
       virtual void rescalePartials (REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes)

   Additional Inherited Members
Author
       Generated automatically by Doxygen for HMSBEAGLE from the source code.

Version 1.0.0							  Fri May 25 2012			       beagle::cpu::BeagleCPU4StateImpl(3)
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