beagleinstancedetails(3) [debian man page]

BeagleInstanceDetails(3)					     HMSBEAGLE						  BeagleInstanceDetails(3)

NAME

       BeagleInstanceDetails - Information about a specific instance.

SYNOPSIS

       #include <libhmsbeagle/beagle.h>

   Public Attributes
       int resourceNumber
       char * resourceName
       char * implName
       char * implDescription
       long flags

Detailed Description
       Information about a specific instance.

Member Data Documentation
   long BeagleInstanceDetails::flags
       Bit-flags that characterize the activate capabilities of the resource and implementation for this instance

   char* BeagleInstanceDetails::implDescription
       Description of implementation with details such as how auto-scaling is performed

   char* BeagleInstanceDetails::implName
       Name of implementation on which this instance is running as a NULL-terminated character string

   char* BeagleInstanceDetails::resourceName
       Name of resource on which this instance is running as a NULL-terminated character string

   int BeagleInstanceDetails::resourceNumber
       Resource upon which instance is running

Author
       Generated automatically by Doxygen for HMSBEAGLE from the source code.

Version 1.0.0							  Fri May 25 2012					  BeagleInstanceDetails(3)

beagle::gpu::BeagleGPUImpl(3)					     HMSBEAGLE					     beagle::gpu::BeagleGPUImpl(3)

NAME

       beagle::gpu::BeagleGPUImpl -

SYNOPSIS

       Inherits beagle::BeagleImpl.

   Public Member Functions
       int createInstance (int tipCount, int partialsBufferCount, int compactBufferCount, int stateCount, int patternCount, int
	   eigenDecompositionCount, int matrixCount, int categoryCount, int scaleBufferCount, int resourceNumber, long preferenceFlags, long
	   requirementFlags)
       int getInstanceDetails (BeagleInstanceDetails *retunInfo)
       int setTipStates (int tipIndex, const int *inStates)
       int setTipPartials (int tipIndex, const double *inPartials)
       int setPartials (int bufferIndex, const double *inPartials)
       int getPartials (int bufferIndex, int scaleIndex, double *outPartials)
       int setEigenDecomposition (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)
       int setStateFrequencies (int stateFrequenciesIndex, const double *inStateFrequencies)
       int setCategoryWeights (int categoryWeightsIndex, const double *inCategoryWeights)
       int setPatternWeights (const double *inPatternWeights)
       int setCategoryRates (const double *inCategoryRates)
       int setTransitionMatrix (int matrixIndex, const double *inMatrix, double paddedValue)
       int setTransitionMatrices (const int *matrixIndices, const double *inMatrices, const double *paddedValues, int count)
       int getTransitionMatrix (int matrixIndex, double *outMatrix)
       int updateTransitionMatrices (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int
	   *secondDerivativeIndices, const double *edgeLengths, int count)
       int updatePartials (const int *operations, int operationCount, int cumulativeScalingIndex)
       int waitForPartials (const int *destinationPartials, int destinationPartialsCount)
       int accumulateScaleFactors (const int *scalingIndices, int count, int cumulativeScalingIndex)
       int removeScaleFactors (const int *scalingIndices, int count, int cumulativeScalingIndex)
       int resetScaleFactors (int cumulativeScalingIndex)
       int copyScaleFactors (int destScalingIndex, int srcScalingIndex)
       int calculateRootLogLikelihoods (const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int
	   *cumulativeScaleIndices, int count, double *outSumLogLikelihood)
       int calculateEdgeLogLikelihoods (const int *parentBufferIndices, const int *childBufferIndices, const int *probabilityIndices, const int
	   *firstDerivativeIndices, const int *secondDerivativeIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices,
	   const int *cumulativeScaleIndices, int count, double *outSumLogLikelihood, double *outSumFirstDerivative, double
	   *outSumSecondDerivative)
       int getSiteLogLikelihoods (double *outLogLikelihoods)
       int getSiteDerivatives (double *outFirstDerivatives, double *outSecondDerivatives)
       template<> int getSiteLogLikelihoods (double *outLogLikelihoods)
       template<> int getSiteLogLikelihoods (double *outLogLikelihoods)
       template<> int getSiteDerivatives (double *outFirstDerivatives, double *outSecondDerivatives)
       template<> int getSiteDerivatives (double *outFirstDerivatives, double *outSecondDerivatives)

   Additional Inherited Members
Author
       Generated automatically by Doxygen for HMSBEAGLE from the source code.

Version 1.0.0							  Fri May 25 2012				     beagle::gpu::BeagleGPUImpl(3)