ace::graphics::glyph::transcript(3pm) [debian man page]
Ace::Graphics::Glyph::transcript(3pm) User Contributed Perl Documentation Ace::Graphics::Glyph::transcript(3pm)NAME
Ace::Graphics::Glyph::transcript - The "gene" glyph
SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are
introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.
The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not
returned by the introns() method) are drawn in a contrasting color to explicit introns.
OPTIONS
In addition to the common options, the following glyph-specific option is recognized:
Option Description Default
------------------------
-implied_intron_color The color to use for gaps gray
not returned by the introns()
method.
-draw_arrow Whether to draw arrowhead true
indicating direction of
transcription.
BUGS
Please report them.
SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2001-05-22 Ace::Graphics::Glyph::transcript(3pm)
Check Out this Related Man Page
Ace::Graphics::Glyph::primers(3pm) User Contributed Perl Documentation Ace::Graphics::Glyph::primers(3pm)NAME
Ace::Graphics::Glyph::primers - The "STS primers" glyph
SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
DESCRIPTION
This glyph draws two arrows oriented towards each other and connected by a line of a contrasting color. The length of the arrows is
immaterial, but the length of the glyph itself corresponds to the length of the scaled feature.
OPTIONS
In addition to the common options, the following glyph-specific options are recognized:
Option Description Default
------------------------
-connect Whether to connect the false
two arrowheads by a line.
-connect_color The color to use for the fgcolor
connecting line.
BUGS
Please report them.
SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
AUTHOR
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2001-02-20 Ace::Graphics::Glyph::primers(3pm)
We are trying to translate in French a very interesting interview with Eben Moglen but we first need a good transcription from a english speaking person. It is 90% completed but it still needs some corrections.
Here is the video (ogg format)
Linux.com :: Eben Moglen: How I discovered Free... (0 Replies)
Hi,
I have a strange problem with arrays in Perl.
That is to say, for me it is strange and perhaps there is a special reason for it that I do not know of.
Not a real Perl Ace.
This is the program, as an example:
#!/usr/bin/perl -w #-d
use strict;
my $pu;
my $pu_list_cmd;
my... (2 Replies)
I'm currently making a card dealing program, it is suppose to display a list of cards like this:
"Ace of Heart, is red"
"Two of Heart, is red"
.
.
"Ace of Spade, is black"
and so on for all suits and numbers.
here is my current code:
#include <stdio.h>
#include <stdlib.h>
#include... (3 Replies)
Hi
I have a file like that contains infomation about genes exons introns made as a single string. i am just planning to get the gene name alone with out any extra information.
intergenic_Nedd4_exon_0_F
Gapvd1_intron_24_R
Gapvd1_exon_25_Rmy output file should be
intergenic_Nedd4
Gapvd1... (13 Replies)