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bio::describablei(3pm) [debian man page]

Bio::DescribableI(3pm)					User Contributed Perl Documentation				    Bio::DescribableI(3pm)

NAME
Bio::DescribableI - interface for objects with human readable names and descriptions SYNOPSIS
# to test this is a describable object $obj->isa("Bio::DescribableI") || $obj->throw("$obj does not implement the Bio::DescribableI interface"); # accessors $name = $obj->display_name(); $desc = $obj->description(); DESCRIPTION
This interface describes methods expected on describable objects, ie ones which have human displayable names and descriptions FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Ewan Birney Email birney@sanger.ac.uk Implementation Specific Functions These functions are the ones that a specific implementation must define. display_name Title : display_name Usage : $string = $obj->display_name() Function: A string which is what should be displayed to the user the string should have no spaces (ideally, though a cautious user of this interface would not assumme this) and should be less than thirty characters (though again, double checking this is a good idea) Returns : A scalar Status : Virtual description Title : description Usage : $string = $obj->description() Function: A text string suitable for displaying to the user a description. This string is likely to have spaces, but should not have any newlines or formatting - just plain text. The string should not be greater than 255 characters and clients can feel justified at truncating strings at 255 characters for the purposes of display Returns : A scalar Status : Virtual perl v5.14.2 2012-03-02 Bio::DescribableI(3pm)

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Bio::Search::StatisticsI(3pm)				User Contributed Perl Documentation			     Bio::Search::StatisticsI(3pm)

NAME
Bio::Search::StatisticsI - A Base object for statistics SYNOPSIS
# do not use this object directly, it provides the following methods # for its subclasses my $void = $obj->set_statistic("statistic_name","statistic_value"); my $value = $obj->get_statistic("statistic_name"); DESCRIPTION
This is a basic container to hold the statistics returned from a program. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Chad Matsalla Email bioinformatics1 at dieselwurks dot com APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ get_statistic Title : get_statistic Usage : $statistic_object->get_statistic($statistic_name); Function: Get the value of a statistic named $statistic_name Returns : A scalar that should be a string Args : A scalar that should be a string set_statistic Title : set_statistic Usage : $statistic_object->set_statistic($statistic_name => $statistic_value); Function: Set the value of a statistic named $statistic_name to $statistic_value Returns : Void Args : A hash containing name=>value pairs perl v5.14.2 2012-03-02 Bio::Search::StatisticsI(3pm)
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