bio::factory::mapfactoryi(3pm) [debian man page]
Bio::Factory::MapFactoryI(3pm) User Contributed Perl Documentation Bio::Factory::MapFactoryI(3pm) NAME
Bio::Factory::MapFactoryI - A Factory for getting markers SYNOPSIS
# get a Map Factory somehow likely from Bio::MapIO system while( my $map = $mapin->next_map ) { print "map name is ", $map->name, " length is ", $map->length, " ", $map->units, " "; $mapout->write_map($map); } DESCRIPTION
This interface describes the necessary minimum methods for getting Maps from a data stream. It also supports writing Map data back to a stream. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ next_map Title : next_map Usage : my $map = $factory->next_map; Function: Get a map from the factory Returns : L<Bio::Map::MapI> Args : none write_map Title : write_map Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : L<Bio::Map::MapI> perl v5.14.2 2012-03-02 Bio::Factory::MapFactoryI(3pm)
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Bio::Factory::LocationFactoryI(3pm) User Contributed Perl Documentation Bio::Factory::LocationFactoryI(3pm) NAME
Bio::Factory::LocationFactoryI - A factory interface for generating locations from a string SYNOPSIS
# Do not use directly, see Bio::Factory::LocationFactory for example use Bio::Factory::FTLocationFactory; my $locfact = Bio::Factory::FTLocationFactory->new(); my $location = $locfact->from_string("1..200"); print $location->start(), " ", $location->end(), " ", $location->strand," "; DESCRIPTION
An interface for Location Factories which generate Bio::LocationI objects from a string. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Hilmar Lapp Email hlapp at gmx.net APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ from_string Title : from_string Usage : $loc = $locfactory->from_string("100..200"); Function: Parses the given string and returns a Bio::LocationI implementing object representing the location encoded by the string. Different implementations may support different encodings. An example of a commonly used encoding is the Genbank feature table encoding of locations. Example : Returns : A Bio::LocationI implementing object. Args : A string. perl v5.14.2 2012-03-02 Bio::Factory::LocationFactoryI(3pm)