bio::graphics::glyph::heat_map_ideogram(3pm) [debian man page]

Bio::Graphics::Glyph::heat_map_ideogram(3pm)		User Contributed Perl Documentation	      Bio::Graphics::Glyph::heat_map_ideogram(3pm)

NAME

       Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph

SYNOPSIS

	 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

       This glyph draws a chromosome ideogram using scored features instead of cytobands.  It is a hybrid of the heat_map and ideograms glyphs and
       accepts options for both.  A typical usage would be to pair this glyph with an aggregator that groups scored features such as blast hits or
       gene_density bins, etc with a centromere.  The result is a chromosome ideogram that has bands whose colors vary porportionate to the
       feature score.

   OPTIONS
       See Bio::Graphics::Glyph for a full explanation of standard options.

       See Bio::Graphics::Glyph::heat_map for an explanation of heat_map options.

       See Bio::Graphics::Glyph::ideogram for an explanation of ideogram options.

BUGS

       Please report them.

SEE ALSO

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

       Sheldon McKay <mckays@cshl.edu>

       Copyright (c) 2006 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20			      Bio::Graphics::Glyph::heat_map_ideogram(3pm)

Bio::Graphics::Glyph::rndrect(3pm)			User Contributed Perl Documentation			Bio::Graphics::Glyph::rndrect(3pm)

NAME

       Bio::Graphics::Glyph::rndrect - The "round rect" glyph

SYNOPSIS

	 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

       This glyph was designed to show seq features in round edge rectangles.  The glyph will be a rectangle if its width is < 4 pixels

BUGS

       Please report them.

SEE ALSO

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
       Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
       Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
       Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
       Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

       Shengqiang Shu <sshu@bdgp.lbl.gov>

       Copyright (c) 2001 BDGP

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20					Bio::Graphics::Glyph::rndrect(3pm)