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bio::graphics::glyph::splice_site(3pm) [debian man page]

Bio::Graphics::Glyph::splice_site(3pm)			User Contributed Perl Documentation		    Bio::Graphics::Glyph::splice_site(3pm)

NAME

       Bio::Graphics::Glyph::splice_site - The "splice_site" glyph

SYNOPSIS

	 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

       This glyph was designed to show an inverted "L" representing splice donors and acceptors.  The vertical part of the L points downwards and
       is positioned in the center of the range (even if the range is quite large).

       In addition to the usual glyph options, this glyph recognizes:

	  Option	    Value	       Description
	  ------	    -----	       -----------

	  direction	    "left" or "right"  direction the short part of the L
					       points

	  height_fraction   0.0 - 1.0	       fractional height of the glyph,
					       usually a callback that uses the
					       feature's score to determine its
					       height

BUGS

       Please report them.

SEE ALSO

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
       Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
       Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
       Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::chromosome, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow,
       Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation,
       Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

       Xiaokang Pan <pan@cshl.org>

       Copyright (c) 2001 BDGP

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20				    Bio::Graphics::Glyph::splice_site(3pm)

Check Out this Related Man Page

Bio::Graphics::Glyph::two_bolts(3pm)			User Contributed Perl Documentation		      Bio::Graphics::Glyph::two_bolts(3pm)

NAME

       Bio::Graphics::Glyph::two_bolts - The "two bolts" glyph

SYNOPSIS

	 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

       This glyph draws two "bolts" on a line. They look like this;

       --------///-- --///--------

   OPTIONS
       In addition to the common options, the following glyph-specific options are recognized:

	 Option      Description		  Default
	 ------      -----------		  -------

	 -bolt_height  Height of the bolt	   10

	 -bolt_length  Length of the bolt	   20

	 -bolt_color   Color of the bolt	   red

	 -remainder_length
		       Length of the short line    10

BUGS

       Please report them.

SEE ALSO

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
       Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
       Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
       Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
       Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

       Vsevolod (Simon) Ilyushchenko <simonf@cshl.edu>.

       Copyright (c) 2004 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20				      Bio::Graphics::Glyph::two_bolts(3pm)
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