MAGE::SQLUtils(3pm) User Contributed Perl Documentation MAGE::SQLUtils(3pm)NAME
Bio::MAGE::SQLWriter - a module for exporting MAGE-OM objects to a database
SYNOPSIS
use Bio::MAGE::SQLWriter;
my $writer = Bio::MAGE::SQLWriter->new(@args);
use dbhandle;
my $dbhandle = dbhandle->new();
$writer->obj2database($dbhandle,@object_list);
DESCRIPTION
Methods for transforming information from a MAGE-OM objects into tuples in a MAGE database.
METHODS
write($MAGE_object);
"write()" prints the objects contained in $MAGE_object as MAGE-ML to the file handle used by the writer.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 249:
'=item' outside of any '=over'
perl v5.10.1 2006-08-23 MAGE::SQLUtils(3pm)
Check Out this Related Man Page
MAGE::Tools::MGEDOntologyEntry(3pm) User Contributed Perl Documentation MAGE::Tools::MGEDOntologyEntry(3pm)Bio::MAGE::Tools::MGEDOntologyEntry
SYNOPSIS
Bio::MAGE::Tools::MGEDOntologyEntry is an abstract class.
Superclass is:
Bio::MAGE::Tools::OntologyEntry
Subclasses are:
Bio::MAGE::Tools::MGEDOntologyClassEntry
Bio::MAGE::Tools::MGEDOntologyPropertyEntry
DESCRIPTION
This is an abstract class for MGEDOntologyClassEntry and MGEDOntologyPropertyEntry with very little mind of its own.
ATTRIBUTES
Attributes are simple data types that belong to a single instance of a class. In the Perl implementation of the MAGE-OM classes, the
interface to attributes is implemented using separate setter and getter methods for each attribute.
isAssignable
Stores whether the represented MGED Ontology concept needs to get a value assigned before use or not. (static feature)
isAssigned
Stores whether an assignable concept has been assigned a value or not (dynamic feature)
errorMessage
Stores a possible error message that arose while trying to set the category or more likely value attributes of this class.
assignableValues
Stores the list of values that can be assigned to this category
BUGS
Please send bug reports to mged-mage@lists.sf.net
AUTHOR
Eric W. Deutsch (edeutsch@systemsbiology.org)
SEE ALSO perl(1).
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 283:
You forgot a '=back' before '=head1'
perl v5.10.1 2006-08-23 MAGE::Tools::MGEDOntologyEntry(3pm)
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