bio::root::build(3pm) [debian man page]
Bio::Root::Build(3pm) User Contributed Perl Documentation Bio::Root::Build(3pm) NAME
Bio::Root::Build - A common Module::Build subclass base for BioPerl distributions SYNOPSIS
...TO BE ADDED DESCRIPTION
This is a subclass of Module::Build so we can override certain methods and do fancy stuff It was first written against Module::Build::Base v0.2805. Many of the methods here are copy/pasted from there in their entirety just to change one or two minor things, since for the most part Module::Build::Base code is hard to cleanly override. Note: per bug 3196, the majority of the code in this module has been revised or commented out to bring it in line with the Module::Build API. In particular, 'requires/recommends' tags in the Build.PL file were not of the same format as those for Module::Build, and so caused serious issues with newer versions (including giving incorrect meta data). Other problematic methods involving automatic installation of prereq modules via CPAN were also removed as they do not work with more modern perl tools such as perlbrew and cpanm. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Sendu Bala Email bix@sendu.me.uk APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ perl v5.14.2 2012-03-02 Bio::Root::Build(3pm)
Check Out this Related Man Page
Bio::Tools::Phylo::Phylip::ProtDist(3pm) User Contributed Perl Documentation Bio::Tools::Phylo::Phylip::ProtDist(3pm) NAME
Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output SYNOPSIS
use Bio::Tools::Phylo::Phylip::ProtDist; my $parser = Bio::Tools::Phylo::Phylip::ProtDist->new(-file => 'outfile'); while( my $result = $parser->next_matrix) { # do something with it } DESCRIPTION
A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also Bio::Matrix::IO::phylip this module may go away. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Shawn Hoon Email shawnh@fugu-sg.org APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Tools::Phylo::Phylip::ProtDist->new(); Function: Builds a new Bio::Tools::Phylo::Phylip::ProtDist object Returns : Bio::Tools::ProtDist Args : -fh/-file => $val, # for initing input, see Bio::Root::IO -program => 'programname' # name of the program next_matrix Title : next_matrix Usage : my $matrix = $parser->next_matrix Function: Get the next result set from parser data Returns : L<Bio::Matrix::PhylipDist> Args : none perl v5.14.2 2012-03-02 Bio::Tools::Phylo::Phylip::ProtDist(3pm)