bio::seqfeature::gene::nc_feature(3pm) [debian man page]

Bio::SeqFeature::Gene::NC_Feature(3pm)			User Contributed Perl Documentation		    Bio::SeqFeature::Gene::NC_Feature(3pm)

NAME

       Bio::SeqFeature::Gene::NC_Feature.pm - superclass for non-coding features

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the object here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - David Block
       Email dblock@gnf.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   is_coding
	Title	: is_coding
	Usage	: if ($feature->is_coding()) {
			    #do something
		   }
	Function: Whether or not the feature codes for amino acid.
	Returns : FALSE
	Args	: none

   cds
	Title	: cds
	Usage	: $cds=$feature->cds();
	Function: get the coding sequence of this feature
	Returns : undef
	Args	: none

perl v5.14.2							    2012-03-02				    Bio::SeqFeature::Gene::NC_Feature(3pm)

Bio::SeqFeature::Gene::ExonI(3pm)			User Contributed Perl Documentation			 Bio::SeqFeature::Gene::ExonI(3pm)

NAME

       Bio::SeqFeature::Gene::ExonI - Interface for a feature representing an exon

SYNOPSIS

       See documentation of methods.

DESCRIPTION

       A feature representing an exon. An exon in this definition is transcribed and at least for one particular transcript not spliced out of the
       pre-mRNA. However, it does not necessarily code for amino acid.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
	to one of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp
       Email hlapp@gmx.net

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   is_coding
	Title	: is_coding
	Usage	: if($exon->is_coding()) {
			  # do something
		  }
	Function: Whether or not the exon codes for amino acid.
	Returns : TRUE if the object represents a feature translated into protein,
		  and FALSE otherwise.
	Args	:

   cds
	Title	: cds()
	Usage	: $cds = $exon->cds();
	Function: Get the coding sequence of the exon as a sequence object.

		  The returned sequence object must be in frame 0, i.e., the first
		  base starts a codon.

		  An implementation may return undef, indicating that a coding
		  sequence does not exist, e.g. for a UTR (untranslated region).

	Returns : A L<Bio::PrimarySeqI> implementing object.
	Args	:

perl v5.14.2							    2012-03-02					 Bio::SeqFeature::Gene::ExonI(3pm)