bio::tools::primer::feature(3pm) [debian man page]
Bio::Tools::Primer::Feature(3pm) User Contributed Perl Documentation Bio::Tools::Primer::Feature(3pm)NAME
Bio::Tools::Primer::Feature - position of a single primer
SYNOPSIS
use Bio::Tools::Primer::Feature;
my $pf = Bio::Tools::Primer::Feature->new( -start => $start, -end => $end, -strand => $strand);
$pf->attach_seq($seq);
# is a SeqFeatureI
print "primer starts at ",$pf->start," with sequence ",$pf->seq->seq(),"
";
# helper functions
print "GC percentage ",$pf->gc(),"
";
print "has inversion of size 4 at ",$pf->inversion(4),"
";
DESCRIPTION
Primer Features represents one primer in a primer pair. This object is mainly for designing primers, and probably principly used in the
primer design system
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Ewan Birney
Email birney-at-ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::Tools::Primer::Feature(3pm)
Check Out this Related Man Page
Bio::Tools::Run::Samtools::Config(3pm) User Contributed Perl Documentation Bio::Tools::Run::Samtools::Config(3pm)NAME
Bio::Tools::Run::Samtools::Config - configurator for Bio::Tools::Run::Samtools
SYNOPSIS
Not used directly.
DESCRIPTION
Exports global configuration variables (as required by Bio::Tools::Run::WrapperBase::CommandExts) to Samtools.pm.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
http://redmine.open-bio.org/projects/bioperl
AUTHOR - Mark A. Jensen
Email maj -at- fortinbras -dot- us
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.12.3 2011-06-18 Bio::Tools::Run::Samtools::Config(3pm)
We have been tuning MySQL lately and I ran accoss two useful tools that you might be interested in:
mysqltuner.pl
tuning-primer.sh
Both of these scripts are quite useful for MySQL tuning. Here is some sample output of mysqltuner.pl
>> MySQLTuner 0.9.8 - Major Hayden... (3 Replies)
OIOIC is a completely new object-oriented mechanism for the C programming language.
Please download the "OIOIC-Primer-2nd-Edition-English.tar.gz". (the English version of << OIOIC Primer >> )
http://code.google.com/p/oioic/downloads/list
Welcome your advice!
Using OIOIC, you can describe... (7 Replies)
hiii alll
i wrote a prgm which would take position and strand from file 1 and tries to locate a string 250 characters ahead/before that position in anothe file (based on strand 0 or 1)
open my $fhConditions, "<", "1.txt" or die "Epic Fail: $!";
open my $fhCharacters, "<", "2.txt" or die "OMG... (1 Reply)
Background:
I have a file of thousands of potential SSR primers from Batch Primer 3.
I can't use primers that will contain the same sequence ID or sequence as another primer.
I have some basic shell scripting skills, but not enough to handle this.
What you need to know:
I need to remove the... (1 Reply)