Boulder::Swissprot(3pm) User Contributed Perl Documentation Boulder::Swissprot(3pm)NAME
Boulder::SwissProt - Fetch SwissProt data records as parsed Boulder Stones
SYNOPSIS
== missing ==
DESCRIPTION
== missing ==
SEE ALSO
Boulder, Boulder::Blast, Boulder::Genbank
AUTHOR
Lincoln Stein <lstein@cshl.org>. Luca I.G. Toldo <luca.toldo@merck.de>
Copyright (c) 1997 Lincoln D. Stein Copyright (c) 1999 Luca I.G. Toldo
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.10.1 1999-11-30 Boulder::Swissprot(3pm)
Check Out this Related Man Page
Stone::Cursor(3pm) User Contributed Perl Documentation Stone::Cursor(3pm)NAME
Stone::Cursor - Traverse tags and values of a Stone
SYNOPSIS
use Boulder::Store;
$store = Boulder::Store->new('./soccer_teams');
my $stone = $store->get(28);
$cursor = $stone->cursor;
while (my ($key,$value) = $cursor->each) {
print "$value: Go Bluejays!
" if $key eq 'State' and $value eq 'Katonah';
}
DESCRIPTION
Boulder::Cursor is a utility class that allows you to create one or more iterators across a Stone object. This is used for traversing
large Stone objects in order to identify or modify portions of the record.
CLASS METHODS
Boulder::Cursor->new($stone)
Return a new Boulder::Cursor over the specified Stone object. This will return an error if the object is not a Stone or a descendent.
This method is usually not called directly, but rather indirectly via the Stone cursor() method:
my $cursor = $stone->cursor;
OBJECT METHODS
$cursor->each()
Iterate over the attached Stone. Each iteration will return a two-valued list consisting of a tag path and a value. The tag path is
of a form that can be used with Stone::index() (in fact, a cursor is used internally to implement the Stone::dump() method. When the
end of the Stone is reached, "each()" will return an empty list, after which it will start over again from the beginning. If you
attempt to insert or delete from the stone while iterating over it, all attached cursors will reset to the beginnning.
For example:
$cursor = $s->cursor;
while (($key,$value) = $cursor->each) {
print "$value: BOW WOW!
" if $key=~/pet/;
}
$cursor->reset()
This resets the cursor back to the beginning of the associated Stone.
AUTHOR
Lincoln D. Stein <lstein@cshl.org>.
COPYRIGHT
Copyright 1997-1999, Cold Spring Harbor Laboratory, Cold Spring Harbor NY. This module can be used and distributed on the same terms as
Perl itself.
SEE ALSO
Boulder, Stone
perl v5.10.1 2011-03-05 Stone::Cursor(3pm)
I have a huge matrix file containing some 1.5 million rows and 6000 columns. The matrix looks something like this:
1 2 3
4 5 6
7 8 9
3 4 5
I want to add all the numbers in the columns of this matrix and display the result to my stdout. This means that the numbers in the first column are:
... (2 Replies)
Hi,
Just trying to get to grips with sed and awk for some reporting for work and I need some assistance:
I have a file that lists policy names on the first line and then on the second line whether the policy is active or not.
Policy Name: Policy1
Active: yes
Policy... (8 Replies)
version info :
vi availabe with RHEL 5.4
I have a text file with 10,000 lines. I want to copy lines from 5000th line to 7000th and redirect to a file. Any idea how I can do this?
Note:
The above scenario is just an example. In my actual requirement, the file has 14 million lines and I want... (9 Replies)
Hi everyone,
I know the following questions are noobish questions but I am asking them because I am confused about the basics of history behind UNIX and LINUX.
Ok onto business, my questions are-:
Was/Is UNIX ever an open source operating system ?
If UNIX was... (21 Replies)
Hello,
I couldn't find an actual introduction thread, so I decided to just put this here.
I go by d0wngrade online. I have been programming in multiple languages for about 15+ years. I started with standard web design languages like HTML and CSS, but I then advanced from design to development... (2 Replies)
Hi guys...
The first active code line in AudioScope.sh is set -u .
This causes a complete exit if a variable is used/found but has not been allocated at the start of the program.
However, apart from writing code to do the task, is there a switch to to check which variables have been... (17 Replies)
Hi.
In thread https://www.unix.com/shell-programming-and-scripting/267833-grouping-counting.html rovf and I had a mini-discussion on grep and awk.
Here is a demo script that compares the awk and grep approaches for this single problem:
#!/usr/bin/env bash
# @(#) s2 Demonstrate group... (1 Reply)
Hello,
I have to fish out some specific columns from a file based on the header value. I have the list of columns I need in a different file. I thought I could read in the list of headers I need,
# file with header names of required columns in required order
headers_file=$2
# read contents... (11 Replies)
For those interested in installing dash shell on OSX Lion to help test POSIX compliancy of shell scripts, it is quite easy. I did it like this:
If you don't have gcc on your system:
0. Download and install the Command Line Tools for Xcode package from Sign In - Apple *
1. Download the dash... (2 Replies)
Hello and thanks in advance for any help anyone can offer me
I'm trying to learn the find command and thought I was understanding it... Apparently I was wrong. I was doing compound searches and I started getting weird results with the -size test. I was trying to do a search on a 1G file owned by... (14 Replies)
I have data of an excel files as given below,
file1
org1_1 1 1 2.5 100
org1_2 1 2 5.5 98
org1_3 1 3 7.2 88
file2
org2_1 1 1 2.5 100
org2_2 1 2 5.5 56
org2_3 1 3 7.2 70
I have multiple excel files as above shown.
I have to copy column 1, column 4 and paste into a new excel file as... (26 Replies)
Dear All,
Taking a break from Vue.js coding for the site, SEO and YT videos; and hopefully addressing some well deserved criticism from some here that I have been too focused on the visual aspects of the forums versus the substance and the community....
While the "current generation... (9 Replies)
Hi all...
Well guys and gals, I jumped in at the deep end and found things that PERL cannot do by default.
Many tricky terminal escape codes are not catered for so I had to create workarounds.
One thing I searched for was this:
Passing perl variable to shell command
AND, @Neo this was... (15 Replies)