debian man page for go::model::root

GO::Model::Root(3pm)					User Contributed Perl Documentation				      GO::Model::Root(3pm)

NAME
	 GO::Model::Root - base class for all GO::Model objects

DESCRIPTION
       base class for all GO::Model objects

Constructors
   new
       Constructor: Basically just calls _initialize().  Most subclasses should not need to override new, but instead should override
       _initialize().

       If _initialize() fails , the procedure will die

       WARNING: This procedure will die if initialization is unsuccessful.  Use an eval statement to catch such exceptions.

   obj_factory
	 Usage	 - $obj->obj_factory->create_new_term_object($h);
	 Alias	 - apph
	 Returns - L<GO::ObjFactory>
	 Args	 - none

   sprint_self
       Prints out a description of the object to a string.

   dump
       dumps the object (can be read back in with eval)

   namespace
	 Usage	 - print $term->namespace();	 # getting the type
	 Usage	 - $term->namespace("molecular_function"); # setting the type
	 Alias	 - type
	 Alias	 - term_type
	 Alias	 - category
	 Alias	 - ontology
	 Returns - string representing type
	 Args	 - string represnting type [optional]

       The OBO namespace for the GO::Model::Term or GO::Model::Relationship

   _cleanup
       Called at object destruction time.  Should be overridden to perform cleanup tasks.

perl v5.14.2							    2013-02-07						      GO::Model::Root(3pm)