MLINK(1) General Commands Manual MLINK(1)NAME
mlink - calculates lod scores and risk with two of more loci
SYNOPSIS
mlink [options] ipedfile.dat pedfile.dat
DESCRIPTION
This manual page documents briefly the mlink command. In fact this is a very raw intend to provide a manpage because the Debian GNU/Linux
distribution requires each program to have a manpage. Any enhancement would be greatly apreciated.
mlink is part of the fastlink software package.
OPTIONS
There might be options but I did not found any information about them. Please foreward any information about them to <tille@debian.org>
SEE ALSO ilink(1), linkmap(1), lodscore(1), unknown(1).
Word-Wide-Web:
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
AUTHOR :
Alejandro Schaeffer <schaffer@helix.nih.gov> and others
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 15, 2003 MLINK(1)
Check Out this Related Man Page
ILINK(1) General Commands Manual ILINK(1)NAME
ilink - GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions
SYNOPSIS
ilink [options] ipedfile.dat pedfile.dat
DESCRIPTION
This manual page documents briefly the ilink command. In fact this is a very raw intend to provide a manpage because the Debian GNU/Linux
distribution requires each program to have a manpage. Any enhancement would be greatly apreciated.
ilink is part of the fastlink software package.
ILINK uses the GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions. If you use the
default scripts produced by lcp, your initial guess for theta is .1 in every dimension. GEMINI evaluates each theta by its likelihood,
seeking to find theta vectors that have a higher pedigree likelihood.
The GEMINI procedure has multiple iterations. Each iteration corresponds to one line of output. Each iteration includes multiple likelihood
function evaluations. Each iteration has two phases. In Phase I GEMINI seeks to improve the current best theta. In Phase II, GEMINI esti-
mates the gradient of the likelihood with respect to the current best theta vector. In the first iteration, Phase I only evaluates the
likelihood at the initial candidate theta.
When ILINK prints out a line such as: maxcensor can be reduced to -32767, it has completed the first likelihood function evaluation. On
long runs, this fact can be used to estimate running time. A reasonable rough estimate for the number of function evaluations is 10*(number
of dimensions of theta vector). The number of dimensions of the theta vector is one fewer than the number of loci in most cases. If male-
theta and femaletheta are allowed to differ (sexdif is set to 1), then the number of dimensions doubles to 2 * (number of loci - 1). Esti-
mating other parameters (with fitmodel set to true) can also increase the number of dimensions.
To learn more about ilink it might be useful to read the file /usr/share/doc/fastlink/README.ILINK if you have a Debian GNU/Linux system.
OPTIONS
There might be options but I did not found any information about them. Please foreward any information about them to <tille@debian.org>
SEE ALSO linkmap(1), lodscore(1), mlink(1), unknown(1).
Word-Wide-Web:
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
AUTHOR :
Alejandro Schaeffer <schaffer@helix.nih.gov> and others
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 15, 2003 ILINK(1)
I have created symbolic links to several frequently used commands, for example:
"lt" is a link to "ls -ltrgo|tail". What can I do to make these links available system-wide, or at least in the directories my coworkers are in most of the time? I have copied the link to several directories, and... (6 Replies)
i have 2 hard drive on my system, running suse 8. one drive is being used, and the other is a vfat drive with only mp3's on it. i am almost out of room on my first drive, i want to move my /home and /bin to hdb which is pretty much unused, ok anyway, can i just copy /home and /bin to hdb mounted as... (3 Replies)
Hello all,
I have files at /var/dir1/dir2/fil1.log etc.,.
dir2 is symlinked to /export/xxx/dir3
I am trying to monitor the disk space of the mount where these log files are present.
How do I determine dynamically the actual directory of the log files and corresponding mount when I use df... (3 Replies)
Hi!
All the basic linux commands, ie. echo, find, etc, are located in /bin. I have a couple of programs that have these commands pointed towards /usr/bin, ie, /usr/bin/echo (even though the actual 'echo' command is in /bin). How can I alias or redirect or link the /usr/bin to /bin just for this... (6 Replies)
Hi Guys,
The script which I am using works really good for finding the file count for files that are not symlink. I know I can use find command like:
find . -type l | wc -l
This way I can get filecount of the symlink but is there a one liner to use -type l and -type f option ? That is... (4 Replies)
Hello. I am working on creating a script to recursively run on my media collection. The goal is to recreate the folder structure, but with slight changes in the folder names based on my rules. The folders will also include the .jpg & .mkv files, renamed according to a similar set of rules.
... (4 Replies)
Hi all,
Am trying to make a backup of a directory to move it to a new directory 'coz I need to do a re-install of a software.
On Linux, I can do cp -rpH but not on Solaris?
Example is as below:
ls -l dir1
total 0
-rw-r----- 1 oracle dba 0 Aug 9 13:08 fil3.txt... (9 Replies)
Hello,
can someone please suggest or is it possible to hide the path for the link from viewing it from remote users.
for examples.
as root user login
#ls -l
lrwxrwxrwx 1 root root 43 Oct 2 16:05 sftpdata -> /data/sftphome/sftpuser1/sftpdata/
#pwd
/home/user1
#
when user1 logs... (4 Replies)
Hello all experts, Im in a situation where Tomcat simply does not want to read this file through the symlink....
I checked permissions..OK
Also checked file & tomcat owner...all OK.
This is what I have my /tomcat/conf/Catalina/local/appname.xml
<Context>
<Resource name="jdbc/black" ... (3 Replies)
Hi All,
Is there any way to create a symlink that will point to last 1000 line of a log file. My symlink will always point to "tail -1000 logfile".
This can be achieved by writing a script and scheduling with high frequency, but I am looking for some other alternatives.
Please let me know... (8 Replies)
i would like to remove a directory and also symlink target inside.
my_directory
-- file1 -> /targetpath/file1
-- file2 -> /targetpath/file2
rm -rf my_directory will not remove symlink target.
rm -rf "`readlink -f file1`" will only remove target if specifying the symlink is specified
... (4 Replies)
Looking for a script or command to -
Move a very large directory with tens of thousands of files and sub-directories recursively (filenames can include spaces) and replace with symlinks pointing to the new location at the same time so there is no downtime
Looking for speed + safety :o (5 Replies)
I'm trying to do something like this:
find . -name blablabla -exec ln -s ./"{:53:14} blablabla" \;
The idea is find blablabla and create a symbolic link to it using part of it's path and then it's name, "blablabla."
I just don't know if I can call characters out of a find variable. ... (16 Replies)
Hello,
On Solaris 10, here are entries for logs in httpd.conf
ErrorLog "|/export/apache/apache-2.2.17/bin/rotatelogs -l -f /var/log/apache/error_log.%Y%m%d 86400"
It keeps creating daily logs with below names -
-rw-r--r-- 1 root root 1016747232 Apr 5 23:59... (16 Replies)