10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I would like to take a fasta file formated like
>0001
agttcgaggtcagaatt
>0002
agttcgag
>0003
ggtaacctga
and use command line perl to move the all sample gt 8 in length to a new file. the result would be
>0001
agttcgaggtcagaatt
>0003
ggtaacctga
cat ${sample}.fasta | perl -lane... (2 Replies)
Discussion started by: jdilts
2 Replies
2. Shell Programming and Scripting
Hi all
I need to put a command line parser together to parse numeric fields and ranges passed to a script. I'm looking for a bash function that is as elegant and simple as possible.
So the input would be of the following form -
1,2,8-12
This would return -
1,2,8,9,10,11,12
Input can... (7 Replies)
Discussion started by: steadyonabix
7 Replies
3. Shell Programming and Scripting
below is the output xml string from some other command and i will be parsing it using awk
cat /tmp/alerts.xml
<Alert id="10102" name="APP-DS-ds_ha-140018-componentFailure-S" alertDefinitionId="13982" resourceId="11427" ctime="1359453507621" fixed="false" reason="If Event/Log Level(ANY) and... (2 Replies)
Discussion started by: vivek d r
2 Replies
4. Shell Programming and Scripting
I am trying to parse the XML Google contact file using tools like xmllint and I even dived into the XSL Style Sheets using xsltproc but I get nowhere.
I can not supply any sample file as it contains private data but you can download your own contacts using this script:
#!/bin/sh
# imports... (9 Replies)
Discussion started by: ripat
9 Replies
5. Programming
Hi,
I've a python script called aaa.py and passing an command line option " -a" to the script like, ./aaa.py -a
& Inside the script if the -a option is given I do some operation if not something else.
code looks like
./aaa.py -a
.
.
if options.a
---some operation---
if not options.a... (1 Reply)
Discussion started by: testin
1 Replies
6. Shell Programming and Scripting
I have a simple script that builds a complex program call which passes a number of parameters to the program. I'm trying to enhance the script to include the value of the command line parameter in the name of a file being created. The problem I'm having is that the parameter may include a forward... (11 Replies)
Discussion started by: pbmax626
11 Replies
7. Shell Programming and Scripting
Looking for a little help parsing some command line arguments in a bash script I am working on, this is probably fairly basic to most, but I do not have much experience with it.
At the command line, when the script is run, I need to make sure the argument passed is a file, it exists in the... (3 Replies)
Discussion started by: Breakology
3 Replies
8. Shell Programming and Scripting
Hi,
My perl script takes few switches which i'm parsing through GetOpt::Long module.
My script looks like something :
myscript.pl --file="foo" --or --file="bar"
The --file switch takes 2 arguments foo and bar.
The 2 values of file are separated by --or switch. I want to ensure that... (1 Reply)
Discussion started by: obelix
1 Replies
9. UNIX for Dummies Questions & Answers
how to parse the command line argument to look for '@' sign and the following with '.'.
In my shell script one of the argument passed is email address. I want to parse this email address to look for correct format.
rmjoe123@hotmail.com has '@' sign and followed by a '.'
to be more... (1 Reply)
Discussion started by: rmjoe
1 Replies
10. UNIX for Advanced & Expert Users
Is there a way to get the command line arguments.
I am using getopt(3) but if the arguments are more than one for a particular option than it just ignores the second argument. For eg
./a.out -x abc def
now abd will be got with -x using getopt "( x : )" and string abc\0def will get stored... (7 Replies)
Discussion started by: jayakhanna
7 Replies