10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
2. Shell Programming and Scripting
Hello experts,
I am converting a number into its binary output as :
read n
echo "obase=2;$n" | bc
I wish to count the maximum continuous occurrences of the digit 1.
Example :
1. The binary equivalent of 5 = 101. Hence the output must be 1.
2. The binary... (3 Replies)
Discussion started by: H squared
3 Replies
3. Shell Programming and Scripting
Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
3 Replies
4. Shell Programming and Scripting
I am trying to use awk to print the unique entries in $2
So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output.
File.txt
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
5 Replies
5. UNIX for Dummies Questions & Answers
I would like to print unique lines without sort or unique. Unfortunately the server I am working on does not have sort or unique. I have not been able to contact the administrator of the server to ask him to add it for several weeks. (7 Replies)
Discussion started by: cokedude
7 Replies
6. Shell Programming and Scripting
I have a need to print nth field based on the parameter passed. Suppose I have 3 fields in a file, passing 1 to the function should print 1st field and so on.
I have attempted below function but this throws an error due to incorrect awk syntax.
function calcmaxlen
{
FIELDMAXLEN=0
... (5 Replies)
Discussion started by: krishmaths
5 Replies
7. UNIX for Dummies Questions & Answers
Hey,
I'm sure this is answered somewhere but my Googling has turned up nothing. I have a file with data in the following format:
<desription of event> at <time and date>The desription of the event is variable length and hence when the list is displayed it is hard to easily see the date (and... (8 Replies)
Discussion started by: RECrerar
8 Replies
8. Shell Programming and Scripting
Hi,
Is there any short method to print from a particular field till another filed using awk?
Example File:
File1
====
1|2|acv|vbc|......|100|342
2|3|afg|nhj|.......|100|346
Expected output:
File2
====
acv|vbc|.....|100
afg|nhj|.....|100 (8 Replies)
Discussion started by: machomaddy
8 Replies
9. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
1 Replies
10. Shell Programming and Scripting
I want to find the top N entries for a certain field based on the values of another field.
For example if N=3, we want the 3 best values for each entry:
Entry1 ||| 100
Entry1 ||| 95
Entry1 ||| 30
Entry1 ||| 80
Entry1 ||| 50
Entry2 ||| 40
Entry2 ||| 20
Entry2 ||| 10
Entry2 ||| 50... (1 Reply)
Discussion started by: FrancoisCN
1 Replies