10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi; problem may be obvious, simple but I have to say it is somehow not easy to locate the issue.
I am doing some word extracting from multiline text.
Interacting in CLI seems to work without issues. First step is to add multiline text to a variable.
expect1.1>
expect1.1> set... (2 Replies)
Discussion started by: aldowski
2 Replies
2. Shell Programming and Scripting
The below command moves all the .vcf files into the directory.
cp /home/cmccabe/Desktop/test/vcf/overall/stats/*.vcf /home/cmccabe/Desktop/NGS/annovar
When I use a bash wrapper the target.txt gets created but the text files do not get copied. All the paths are the same, but not sure why... (2 Replies)
Discussion started by: cmccabe
2 Replies
3. Shell Programming and Scripting
I ran this script yesterday (in the background)
/usr/bin/nohup myfilelocation/myscriptname.sh &
the script worked perfectly.
i ran it today (also in the background) and just sat there. So i killed it and ran it normally and it worked perfectly.
Anyone suggest why it just sat there and... (8 Replies)
Discussion started by: twinion
8 Replies
4. Shell Programming and Scripting
Hi, I've got a Bash backup script I'm trying to run on a directory via a cron job nightly. If I ssh in and run the script manually it works flawlessly. If I set up the cron to run evertything is totally messed up I don't even know where to begin.
Basically the path structure is
... (6 Replies)
Discussion started by: wyclef
6 Replies
5. UNIX for Dummies Questions & Answers
Hello,
i have cronjob:
crontab -l
* * * * * pkill -f domexpcheck;sh /root/dom/domexpcheck.sh
it runs:
/var/log/cron
Mar 25 12:11:01 vps crond: (root) CMD (pkill -f domexpcheck;sh /root/dom/domexpcheck.sh)
but somehow script dont run properly via cronjob. But when i execute cronjob... (7 Replies)
Discussion started by: postcd
7 Replies
6. UNIX for Dummies Questions & Answers
Greetings, I have a C-program that is made to implement a hidden Markov model on an input file. The program is very memory intensive.
I've installed it on my local server where I have an account and it compiles fine. The way they have the server set up is that you can either work... (1 Reply)
Discussion started by: Twinklefingers
1 Replies
7. Shell Programming and Scripting
I am working with a sh script on a solaris 9 zone (sol 10 host) that grabs information to build the configuration command line. the variables Build64, SSLopt, CONFIGopt, and CC are populated in the script. the script includes
CC=`which gcc`
CONFIGopt=' --prefix=/ --exec-prefix=/usr... (8 Replies)
Discussion started by: oly_r
8 Replies
8. Shell Programming and Scripting
Hello,
So my knowledge of bash scripting is not that great and I have been trying to solve this problem on my own for awhile to no avail.
Here's the error I get when running it with an OS that uses bash 3.2.x:
testagain.sh: line 10: *-1: syntax error: operand expected (error token is... (2 Replies)
Discussion started by: forkandspoon
2 Replies
9. Shell Programming and Scripting
I'm trying to use unison from bash on windows with cygwin. I don't know if this is a cygwin question, bash question or unison question. Since I always get reprimanded by the cygwin mailing list for assuming it is a cygwin problem, I'll assume it is a bash question.
The following commands work... (7 Replies)
Discussion started by: siegfried
7 Replies
10. Shell Programming and Scripting
I am having trouble running a .sh file. The code 'x=${file_name:0:$z-11}' is giving me a bad substitution error. However when I run in BASH it works. Thing is when this goes to production the .sh will not be running in BASH. Is there a way to substring a string not in BASH or a way to invoke... (2 Replies)
Discussion started by: edwardtk11
2 Replies