10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all,
I have a fasta file of a reference sequnce, I will like to retrieve sequences corresponding to a list of start and end position in another file
>my_ref_seq
GCCCTATAAGGGCAGAAGCTTGTCCTTCTTGTGCCAGTTATGACGTTTGTCCTAACTGCACATCTGGTAG... (4 Replies)
Discussion started by: Ibk
4 Replies
2. Shell Programming and Scripting
Hi All,
I wanted a sed/awk command to add a value/character on a particular position without disturbing the position of other characters.
I have file a.txt
OL 10031 Day Black Midi Good Value P01 P07
OL 10031 Day Black Short Good Value P01 P07
I want to get the output as... (2 Replies)
Discussion started by: rahulsk
2 Replies
3. Shell Programming and Scripting
Hi,
I have a file with multiple lines(fixed width dat file). I want to search for '02' in the positions 45-46 and if available, in that lines, I need to replace value in position 359 with blank. As I am new to unix, I am not able to figure out how to do this. Can you please help me to achieve... (9 Replies)
Discussion started by: Pradhikshan
9 Replies
4. Shell Programming and Scripting
hi guys,
i want command or script to display the content of file from 2nd position to last but one position of a file
abcdefghdasdasdsd
123,345,678,345,323
434,656,656,656,656
678,878,878,989,545
4565656667,65656
i want to display the same above file without first and... (2 Replies)
Discussion started by: hemanthsaikumar
2 Replies
5. UNIX for Dummies Questions & Answers
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Discussion started by: pathunkathunk
2 Replies
6. Shell Programming and Scripting
I want to remove text from nth position to nth position couple of times in same line
my line is
"hello is there anyone can help me with this question"
I need like this
ello is there anyone can help me with question
'h' is removed and 'this' removed from the line. I want to do this... (5 Replies)
Discussion started by: elamurugu
5 Replies
7. Shell Programming and Scripting
Hi,
Having a following file's content, lets say:
ABC|ANA|LDJ|||||DKD||||||
AJJ|KKDD||KKDK||||||||||||
KKD||KD|||LLLD||||LLD|||||
Problem:
Need to replace pipes from 8th occurrence of pipe till end.
so the result should be:
ABC|ANA|LDJ|||||DKD
AJJ|KKDD||KKDK||||
-------
-------
... (12 Replies)
Discussion started by: _Noprofi
12 Replies
8. Shell Programming and Scripting
I need a script for...
how to find a position of column data and print some string in the next line and same position
position should find based on *HEADER8* in text
for ex: ord123 abs 123 987HEADER89 test234
ord124 abc 124 987HEADER88 test235
... (1 Reply)
Discussion started by: naveenkcl
1 Replies
9. Shell Programming and Scripting
I have file format like below and I'm trying to modify this file.
I need to add 'ENDEND' end of each record.
01 ASH01 1CTCTL EDPPOO STAND
01 ASH08 0020 A1TH 101
01 ASH09 0022 A1TH 102
01 ASH09 0022 A1TH 103
01 ASH02 2CTCTL ... (5 Replies)
Discussion started by: naveenkcl
5 Replies
10. Shell Programming and Scripting
I Have to check in a file that all the lines are ending at same posiotin.
Ex : line 1 is ending at position 88
line 2 should at same position i.e 88
Thanks in advance (6 Replies)
Discussion started by: evvander
6 Replies